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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5033858_5036175_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5033858 - 5036175
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GCGTGCTCATCT
Flanking Amino Acid:
SVPGEEAAVARPASPRDSSF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
44.8
-0.3
2.2
60.59
48.6

Associated Gene:

Gene:
POR
Ensembl Gene ID:
ENSAPLG00000005585
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044244
5023957 - 5037056
13100