About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_504223_504315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
504223 - 504315
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATGA
5'SS Class:
major
3'SS Sequence:
TTGTTTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CATTGCTTATGT
Flanking Amino Acid:
TFKSPCFPIKFPPDDPRVLR
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
42
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79
0.65
0.9
77.9
36.6
Minor 5ss
41.8
-0.9
3.2
57
47.1
Minor BPS
47.7
-0.1
2.3
68.52
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009876
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010325
496984 - 509780
12797