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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_504632_505804_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
504632 - 505804
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATA
Flanking Amino Acid:
KSMNIPCFKAGDKRVTENLG
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.7
81.2
29.6
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
64.8
0.46
1.9
80.63
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009876
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010325
496984 - 509780
12797