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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5064808_5065012_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5064808 - 5065012
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CGTTATTTAAAT
Flanking Amino Acid:
QGSQSYGQTQGYSGYGQSGD
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.4
0.57
1
67.3
42
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
60.6
0.41
1.6
74.96
41.5

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893