About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5065104_5065182_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5065104 - 5065182
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGCTA
5'SS Class:
major
3'SS Sequence:
CCTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTTTCCTTGATT
Flanking Amino Acid:
YHGNYGQNQTGYGQDSQGYD
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
63.5
42.2
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
80.5
0.69
0.9
76.8
36.3
Minor 5ss
36.8
-1.5
3.2
47.8
47.7
Minor BPS
89.6
1.33
0.7
99.24
21.9

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893