Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5065301_5067661_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5065301 - 5067661

Intron Length:

2361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TAGCTATTAATA

Flanking Amino Acid:

SQGQQKGSSRGGRGSYEQKS

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

69.6

42.7

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

76.2

0.59

1.1

80.1

36.7

Minor 5ss

31.2

-2.2

3.1

31.4

42.6

Minor BPS

54.9

0.15

1.6

62.9

37.2

Associated Gene:

Gene:

TAF15

Ensembl Gene ID:

ENSAPLG00000006217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006502

5027457 - 5081349

53893