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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_506806_508131_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
506806 - 508131
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GCAATGAATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATTT
Flanking Amino Acid:
FCASWRIITEGGIDPLIRGM
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
56.2
0.14
1.1
47.7
43.7
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
62.8
0.48
1.8
80.66
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009876
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010325
496984 - 509780
12797