Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5068894_5075457_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5068894 - 5075457

Intron Length:

6564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

ATTTCTTCAATT

Flanking Amino Acid:

MDGRGHMSGYSGGDRGGFKN

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.8

1.15

0.6

96.1

12.1

Major BPS

71.6

0.54

33.1

Major PPT

0.9

0.6

85.3

Minor 5ss

37.4

-1.4

2.8

50.6

45.9

Minor BPS

72.7

0.79

1.4

86.57

33.1

Associated Gene:

Gene:

TAF15

Ensembl Gene ID:

ENSAPLG00000006217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006502

5027457 - 5081349

53893