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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5076123_5076685_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5076123 - 5076685
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTTTTTTGATA
Flanking Amino Acid:
QRDYGQRSDADTESDNSDNN
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78.3
0.64
1
76.5
37.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
68.6
0.58
1.1
73.85
31.4

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893