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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5076796_5077339_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5076796 - 5077339
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
CTTTGCCAAATA
Flanking Amino Acid:
DYFKQIGIIKTNKKTGKPMI
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
45.7
-0.3
2.3
63.3
43.7

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893