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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5077470_5078733_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5077470 - 5078733
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTGATCTTACTC
Flanking Amino Acid:
SAKAAIDWFDGKEFNGNVIK
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
85.7
0.8
0.8
80.2
32
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
56.8
0.19
1.6
66.1
40.2

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893