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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5080457_5080571_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5080457 - 5080571
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGTGCTGATTT
Flanking Amino Acid:
PRPEDSRPSGDFRGRGGYGG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.2
35.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.5
0.73
0.8
73.9
36.5
Minor 5ss
32.7
-2
3.1
40.4
45.8
Minor BPS
47
-0.1
2.1
66.94
44.2

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893