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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5080675_5080969_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5080675 - 5080969
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTGTTATGT
Flanking Amino Acid:
GGGYGGKMGGRNDFRNDQRN
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
46.8
-0.1
2.4
72.18
44.9

Associated Gene:

Gene:
TAF15
Ensembl Gene ID:
ENSAPLG00000006217
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006502
5027457 - 5081349
53893