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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5081723_5093248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5081723 - 5093248
Intron Length:
11526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGATGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ACCCCAATAACT
Flanking Amino Acid:
ACPGSNSTNKQFLQKYGYLG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.4
42.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76
0.58
0.8
70
30.9
Minor 5ss
30.5
-2.2
3.2
38
46.9
Minor BPS
48.6
-0
1.9
66.26
43.7

Associated Gene:

Gene:
MMP28
Ensembl Gene ID:
ENSAPLG00000006470
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027478
5081627 - 5099690
18064