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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_508303_509168_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
508303 - 509168
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGGTCCTGACCA
Flanking Amino Acid:
LQRGRDHGLPGYNAWRRFCG
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
85.4
0.8
0.8
80.1
31.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
52.3
0.07
1.8
62.03
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009876
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010325
496984 - 509780
12797