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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5093329_5093688_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5093329 - 5093688
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTCCTTTACA
Flanking Amino Acid:
HSPVEFTAALRDFQRVSHLP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.4
0.8
0.7
79.3
26.3
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
70.6
0.64
1.6
75.18
42.3

Associated Gene:

Gene:
MMP28
Ensembl Gene ID:
ENSAPLG00000006470
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006714
5081372 - 5099690
18319
ENSAPLT00000027478
5081627 - 5099690
18064