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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5096861_5097109_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5096861 - 5097109

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGGGTGTC

5'SS Class:

major

3'SS Sequence:

CTTTGCCCAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CTTGCCCTCACG

Flanking Amino Acid:

CHSFFDAVTADVDDNLYIFK

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

68.4

36.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

72.4

0.5

0.9

67.3

33.9

Minor 5ss

30.6

-2.2

3.5

39.3

41.1

Minor BPS

47.5

-0.3

2.3

59.58

47.9

Associated Gene:

Gene:

MMP28

Ensembl Gene ID:

ENSAPLG00000006470

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027478

5081627 - 5099690

18064

ENSAPLT00000006714

5081372 - 5099690

18319