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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5104582_5104704_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5104582 - 5104704
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
GCTCTGTGCACC
Flanking Amino Acid:
PAQPRRVPSGRTREPPPRSP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70
37.3
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
31.6
-2.1
3.2
41.1
45.6
Minor BPS
39
-0.8
2.3
48.67
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023918
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037716
5101898 - 5105893
3996
ENSAPLT00000028259
5101898 - 5108031
6134
ENSAPLT00000038998
5101898 - 5105893
3996