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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_513414_515248_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
513414 - 515248
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTGTCTTACTC
Flanking Amino Acid:
YSQKEKRFTPGKITIQILPE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.2
0.72
0.8
73.2
37.1
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
55.4
0.15
1.7
64.76
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010731
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011167
513268 - 520598
7331