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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_515918_516213_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
515918 - 516213
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTCCCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTCATCTCAATG
Flanking Amino Acid:
EVAHSMHKDNFRVLIFPEGT
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
78.8
0.65
0.7
72.8
25.4
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
54.2
-0
1.7
59.71
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010731
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011167
513268 - 520598
7331