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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5160415_5163379_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5160415 - 5163379
Intron Length:
2965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CCGTTTAGAAAT
Flanking Amino Acid:
VQQVLSLATQDSDNPDLRDR
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
70
0.5
1
67
39.8
Major PPT
72.9
0.52
0.9
68.7
37.2
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
42.9
-0.4
1.7
53.92
41.8

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027761
5117399 - 5192139
74741
ENSAPLT00000007091
5126166 - 5192139
65974
ENSAPLT00000005917
5123893 - 5192118
68226
ENSAPLT00000042176
5117399 - 5192139
74741