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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5165423_5169731_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5165423 - 5169731
Intron Length:
4309

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTGTTTTAATT
Flanking Amino Acid:
AIGRCAIKVEQSAERCVSTL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.4
1.17
0.7
94.3
13.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.2
0.7
0.7
73.7
31.4
Minor 5ss
26.7
-2.7
3.6
37.4
40
Minor BPS
67.3
0.62
1.4
78.3
39.3

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005917
5123893 - 5192118
68226
ENSAPLT00000042176
5117399 - 5192139
74741
ENSAPLT00000027761
5117399 - 5192139
74741
ENSAPLT00000007091
5126166 - 5192139
65974