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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_516963_520413_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
516963 - 520413
Intron Length:
3451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
IPRGRNCENMKFLSMSFLPL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010731
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011167
513268 - 520598
7331