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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5172128_5173042_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5172128 - 5173042
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
GGTGAGACAACA
Flanking Amino Acid:
LRNINLIVQKRPEILKQEIK
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
87.3
0.84
0.7
85.6
29.1
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
35.8
-1
2.3
47.45
41.8

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027761
5117399 - 5192139
74741
ENSAPLT00000007091
5126166 - 5192139
65974
ENSAPLT00000005917
5123893 - 5192118
68226
ENSAPLT00000042176
5117399 - 5192139
74741