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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5173265_5175390_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5173265 - 5175390
Intron Length:
2126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTCTCTTACTC
Flanking Amino Acid:
YNPKDDREAQSICERVTPRL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.7
0.69
0.8
71.9
38
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
51.5
0.03
1.6
58.43
41.4

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027761
5117399 - 5192139
74741
ENSAPLT00000007091
5126166 - 5192139
65974
ENSAPLT00000005917
5123893 - 5192118
68226
ENSAPLT00000042176
5117399 - 5192139
74741