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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5175582_5187041_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5175582 - 5187041
Intron Length:
11460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTAC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TAGCAGGGAATA
Flanking Amino Acid:
RDLIADSNPMVVANAVAALS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.6
35.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
77.2
0.61
0.7
68.6
31.7
Minor 5ss
37.2
-1.4
3.3
46.7
43.5
Minor BPS
34
-1.2
2.4
43.76
38.2

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007091
5126166 - 5192139
65974
ENSAPLT00000005917
5123893 - 5192118
68226
ENSAPLT00000042176
5117399 - 5192139
74741
ENSAPLT00000027761
5117399 - 5192139
74741