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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5189994_5192081_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5189994 - 5192081
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAA
U12 Branch Point Sequence:
AGAACCTCAATC
Flanking Amino Acid:
DSKYFTTNKKGEIFELKAEL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
64.3
0.36
1
65.6
31.9
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
54.4
0.12
1.6
60.16
38.4

Associated Gene:

Gene:
AP2B1
Ensembl Gene ID:
ENSAPLG00000006779
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042176
5117399 - 5192139
74741
ENSAPLT00000027761
5117399 - 5192139
74741
ENSAPLT00000007091
5126166 - 5192139
65974
ENSAPLT00000005917
5123893 - 5192118
68226