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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5228405_5228566_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5228405 - 5228566
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
GTGTCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAG
U12 Branch Point Sequence:
GGTGCCTGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
51.1
0.03
1.5
51.1
44.3
Major PPT
72.1
0.5
0.9
65.9
35.9
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
49.1
-0
1.9
60.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008196
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008535
5228284 - 5234153
5870