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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5229907_5230357_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5229907 - 5230357

Intron Length:

451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CCTGCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCACAT

U12 Branch Point Sequence:

GCTGCCACATCC

Flanking Amino Acid:

MGAPGSGKTQVCLSIAASVS

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.8

72.2

39.5

Major BPS

48.9

-0

1.2

56.9

40.5

Major PPT

75.1

0.57

0.8

65.3

36.2

Minor 5ss

26.6

-2.7

31.5

42.8

Minor BPS

42.3

-0.6

2.1

52.27

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008196

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008535

5228284 - 5234153

5870

ENSAPLT00000031976

5228284 - 5236494

8211