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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5236102_5255095_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5236102 - 5255095
Intron Length:
18994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TAATGTATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
88.6
0.87
0.7
80.8
31.1
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
43.7
-0.4
2.1
62.61
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031971
5235896 - 5266173
30278