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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5250749_5255095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5250749 - 5255095

Intron Length:

4347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

TAATGTATATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.5

38.7

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

88.6

0.87

0.7

80.8

31.1

Minor 5ss

25.2

-2.8

3.2

31.3

42.9

Minor BPS

43.7

-0.4

2.1

62.61

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042043

5250390 - 5265793

15404

ENSAPLT00000039504

5235896 - 5266173

30278