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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5255287_5260606_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5255287 - 5260606
Intron Length:
5320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCCAGTTTAATT
Flanking Amino Acid:
GVHFDNSSRKHICVDCKKHF
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
53
0.17
1.8
67.54
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020714
5234450 - 5265793
31344
ENSAPLT00000039504
5235896 - 5266173
30278
ENSAPLT00000009108
5255101 - 5265415
10315
ENSAPLT00000031971
5235896 - 5266173
30278
ENSAPLT00000027339
5255096 - 5265793
10698
ENSAPLT00000021428
5248289 - 5265793
17505
ENSAPLT00000041005
5234747 - 5267430
32684