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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5259780_5260606_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5259780 - 5260606
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCCAGTTTAATT
Flanking Amino Acid:
EHFLQKSTWTHICVDCKKHF
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
53
0.17
1.8
67.54
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042043
5250390 - 5265793
15404