Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5260814_5260900_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5260814 - 5260900

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATTTCTG

5'SS Class:

major

3'SS Sequence:

TGCCTCTGGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GCCCATTTAATA

Flanking Amino Acid:

TELCREKEDLQDFVTHPSTS

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

59.9

44.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

63.9

0.31

1.1

60.2

40.5

Minor 5ss

44.1

-0.6

2.8

55.5

Minor BPS

49.8

-0

1.5

54.01

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041005

5234747 - 5267430

32684