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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5261012_5262962_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5261012 - 5262962
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
AAAGCTTTATTC
Flanking Amino Acid:
SSSRAQEHQQATGYVSPSQA
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
82.3
0.73
0.7
81
24.2
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
48.8
-0.1
1.6
54.37
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021428
5248289 - 5265793
17505
ENSAPLT00000042043
5250390 - 5265793
15404
ENSAPLT00000020714
5234450 - 5265793
31344
ENSAPLT00000041005
5234747 - 5267430
32684
ENSAPLT00000009108
5255101 - 5265415
10315
ENSAPLT00000039504
5235896 - 5266173
30278
ENSAPLT00000031971
5235896 - 5266173
30278