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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5263047_5263422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5263047 - 5263422
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAC
5'SS Class:
major
3'SS Sequence:
TGTTCCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAGAAT
U12 Branch Point Sequence:
AGAGCAAGAATT
Flanking Amino Acid:
PEAPTEEETQSTHSGDNLVL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
34.9
Major BPS
47.1
-0.1
1.4
53.7
38.6
Major PPT
84.7
0.78
0.8
81.6
30.4
Minor 5ss
35.4
-1.7
3
43.7
44.1
Minor BPS
41.4
-0.5
1.9
55.67
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021428
5248289 - 5265793
17505
ENSAPLT00000042043
5250390 - 5265793
15404
ENSAPLT00000020714
5234450 - 5265793
31344
ENSAPLT00000041005
5234747 - 5267430
32684
ENSAPLT00000009108
5255101 - 5265415
10315
ENSAPLT00000039504
5235896 - 5266173
30278
ENSAPLT00000031971
5235896 - 5266173
30278