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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5263631_5264931_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5263631 - 5264931
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATGT
Flanking Amino Acid:
LYKEKDLQHLVSDTDDQMGG
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.2
0.72
0.9
76.5
37.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
59.6
0.38
1.9
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021428
5248289 - 5265793
17505
ENSAPLT00000041005
5234747 - 5267430
32684
ENSAPLT00000020714
5234450 - 5265793
31344
ENSAPLT00000039504
5235896 - 5266173
30278
ENSAPLT00000031971
5235896 - 5266173
30278
ENSAPLT00000027339
5255096 - 5265793
10698
ENSAPLT00000042043
5250390 - 5265793
15404