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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5264956_5265233_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5264956 - 5265233
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TCTTGTTTACTT
Flanking Amino Acid:
HLVSDTDDQMGGAGRSGTED
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
73.9
0.54
0.9
73.6
36
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
53.8
0.2
2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027339
5255096 - 5265793
10698
ENSAPLT00000042043
5250390 - 5265793
15404
ENSAPLT00000021428
5248289 - 5265793
17505
ENSAPLT00000041005
5234747 - 5267430
32684
ENSAPLT00000020714
5234450 - 5265793
31344
ENSAPLT00000039504
5235896 - 5266173
30278
ENSAPLT00000031971
5235896 - 5266173
30278