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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5265379_5267199_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5265379 - 5267199
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTACGTTGT
5'SS Class:
major
3'SS Sequence:
TTCCCCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGAGTTTTACCT
Flanking Amino Acid:
KRMSECPICRQLFSNLWLKV
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
64
43
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.2
0.63
0.9
76.5
32.1
Minor 5ss
43
-0.8
3.1
63.1
42.6
Minor BPS
51.9
0.14
1.7
68.47
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008748
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041005
5234747 - 5267430
32684