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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5272584_5273193_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5272584 - 5273193

Intron Length:

610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ATACTGTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTAAT

U12 Branch Point Sequence:

TCTTCCTTAATA

Flanking Amino Acid:

YPDFIVPDPKKAPVWEITGA

Intron Amino Acid Position:

766

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

74.6

0.61

1.1

75.5

35.1

Major PPT

64.9

0.33

62.4

43.5

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

1.16

0.9

87.11

31.6

Associated Gene:

Gene:

LIG3

Ensembl Gene ID:

ENSAPLG00000008964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009386

5269027 - 5283392

14366