Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5273269_5274110_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5273269 - 5274110

Intron Length:

842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

GTGTTCTTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATCAT

U12 Branch Point Sequence:

GTGTTCTTAATA

Flanking Amino Acid:

TELDMVKISKDPSKIPSWLK

Intron Amino Acid Position:

741

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

75.9

0.64

1.1

77.7

35.2

Major PPT

70.3

0.46

66.4

39.6

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

74.9

0.78

1.1

75.45

36.3

Associated Gene:

Gene:

LIG3

Ensembl Gene ID:

ENSAPLG00000008964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009386

5269027 - 5283392

14366