Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5274254_5274655_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5274254 - 5274655

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

AAGATGTGAACT

Flanking Amino Acid:

LGAFYGQGSKGGMMSIFLMG

Intron Amino Acid Position:

693

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.8

1.08

0.7

85.3

32.2

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

78.5

0.64

0.7

26.3

Minor 5ss

38.8

-1.3

52.9

44.3

Minor BPS

45.1

-0.2

2.1

60.95

42.4

Associated Gene:

Gene:

LIG3

Ensembl Gene ID:

ENSAPLG00000008964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009386

5269027 - 5283392

14366