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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5275516_5275697_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5275516 - 5275697
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATAATT
Flanking Amino Acid:
ILFSEMKHVTKASDLADMIT
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.8
43.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
34.6
-1.8
3.1
46.9
42.4
Minor BPS
74.2
0.84
1.6
88.85
36.2

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366