About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5275786_5276222_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5275786 - 5276222
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATATCCTTAATT
Flanking Amino Acid:
IYFNDISLMDRPLRERRKFL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73
0.52
0.9
64.8
41.3
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
85.6
1.2
0.9
91.59
30.9

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366