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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5277198_5277677_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5277198 - 5277677
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTCTCCCTCAAG
Flanking Amino Acid:
RSLKPVLPHKVAHFKDFIPQ
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
74.6
0.55
1
72.7
32.5
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
47.7
-0.3
2.2
61.25
46.2

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366