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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5278649_5278761_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5278649 - 5278761
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TGATTTGTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
CTGTCCTTGATT
Flanking Amino Acid:
DLKMNAGAKHVLDALDPNAY
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.7
42.1
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
67
0.38
1.2
67
42.9
Minor 5ss
37.5
-1.4
2.9
47
41.2
Minor BPS
75.8
0.89
1.2
82.57
39.6

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366