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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5278840_5279498_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5278840 - 5279498

Intron Length:

659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCACTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TATCTCTGAATC

Flanking Amino Acid:

QQSVLHNITRRCTGNDLKCI

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

28.8

Major BPS

69.8

0.49

37.5

Major PPT

81.1

0.7

0.8

78.2

Minor 5ss

31.6

-2.1

3.1

46.4

Minor BPS

62.6

0.37

1.4

69.88

34.9

Associated Gene:

Gene:

LIG3

Ensembl Gene ID:

ENSAPLG00000008964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009386

5269027 - 5283392

14366