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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5280727_5281168_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5280727 - 5281168

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGATTA

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CAGTTTCTAATC

Flanking Amino Acid:

QDFLQKGTGGDGFHGDVYLT

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

79.5

29.5

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

87.5

0.84

0.8

80.2

37.3

Minor 5ss

47.6

-0.2

2.8

64.6

46.8

Minor BPS

48.9

-0.1

1.6

54.99

37.9

Associated Gene:

Gene:

LIG3

Ensembl Gene ID:

ENSAPLG00000008964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009386

5269027 - 5283392

14366