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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5281367_5282229_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5281367 - 5282229
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTCTTTCATC
Flanking Amino Acid:
VNPKKFSGFTAKPKNSEDVP
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.8
0.63
0.9
69.9
40.6
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
63.8
0.42
1.7
73.46
38.5

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366