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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5282368_5282875_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5282368 - 5282875
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AAACCCTTACAT
Flanking Amino Acid:
EKELIQKHIAEATSKAASTP
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
52.9
0.17
1.7
67.94
41.8

Associated Gene:

Gene:
LIG3
Ensembl Gene ID:
ENSAPLG00000008964
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009386
5269027 - 5283392
14366